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|
name: Format validation
on:
push:
branches:
- '*'
- '!rc/*'
paths:
- 'test/writer.jats_articleauthoring'
- 'test/writer.jats_publishing'
- 'test/writer.jats_archiving'
- 'test/tables.jats_archiving'
- 'test/tables/nordics.jats_archiving'
- 'test/tables/planets.jats_archiving'
- 'test/tables/students.jats_archiving'
pull_request:
branches:
- '*'
- '!rc/*'
paths:
- 'test/writer.jats_articleauthoring'
- 'test/writer.jats_publishing'
- 'test/writer.jats_archiving'
- 'test/tables.jats_archiving'
- 'test/tables/nordics.jats_archiving'
- 'test/tables/planets.jats_archiving'
- 'test/tables/students.jats_archiving'
jobs:
jats:
name: JATS
runs-on: ubuntu-latest
env:
VALIDATOR_URL: "https://jats-validator.hubmed.org/dtd/"
strategy:
fail-fast: false
matrix:
tagset:
- articleauthoring
- publishing
- archiving
steps:
- name: Checkout
uses: actions/checkout@v2
- name: Validate writer output
run: |
filename=test/writer.jats_${{ matrix.tagset }}
printf "Validating file %s\n" "$filename"
json="$(curl --form "xml=@${filename}" --silent "$VALIDATOR_URL")"
err_count="$(printf '%s' "$json" | jq '.errors | length')"
if [ "$err_count" -eq 0 ]; then
printf "File was validated successfully.\n"
exit 0
else
printf "Validator report:\n%s" "$json"
exit 1
fi
- name: Validate tables
# Archiving has the simplest template, so we only check with that.
if: matrix.tagset == 'archiving'
run: |
tmpl="$(cat <<EOF
<?xml version="1.0" encoding="utf-8" ?>
<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD v1.2 20190208//EN"
"JATS-archivearticle1.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="1.2" article-type="other">
<front><article-meta></article-meta></front>
<body>%s</body></article>
EOF
)"
jats_file="$(mktemp jats-tables.XXXXX)"
exit_code=0
for f in tables tables/nordics tables/planets tables/students; do
filename=test/$f.jats_archiving
printf "Validating %s...\n" "$filename"
printf "$tmpl" "$(cat $filename)" > "$jats_file"
json="$(curl --form "xml=@${jats_file}" --silent "$VALIDATOR_URL")"
err_count="$(printf "%s" "$json" | jq '.errors | length')"
if [ "$err_count" -eq 0 ]; then
printf "Table output is valid when used as body content.\n"
else
printf "Validator report:\n%s" "$json"
exit_code=1
fi
done
exit "$exit_code"
|
