JATS writer: fix citations (#7018)

* JATS writer: keep code lines at 80 chars or below

* JATS writer: fix citations

1 files changed, 0 insertions, 203 deletions

diff --git a/data/jats.csl b/data/jats.csl
deleted file mode 100644
index 6972cb3f8..000000000
--- a/data/jats.csl
+++ /dev/null
@@ -1,203 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<style xmlns="http://purl.org/net/xbiblio/csl" class="in-text" version="1.0" default-locale="en-US">
-  <info>
-    <title>Journal Article Tag Suite</title>
-    <title-short>JATS</title-short>
-    <id>http://www.zotero.org/styles/journal-article-tag-suite</id>
-    <link href="https://github.com/MartinPaulEve/JATS-CSL/blob/master/jats.csl" rel="self"/>
-    <link rel="documentation" href="http://jats.nlm.nih.gov/archiving/tag-library/1.0/index.html"/>
-    <author>
-      <name>Martin Paul Eve</name>
-      <email>martin@martineve.com</email>
-    </author>
-    <category citation-format="numeric"/>
-    <category field="medicine"/>
-    <category field="biology"/>
-    <summary>Use this style to generate bibliographic data in Journal Article Tagging Suite (JATS) 1.0 XML format</summary>
-    <updated>2014-06-21T17:41:26+00:00</updated>
-    <rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License. Originally by Martin Fenner.</rights>
-  </info>
-  <locale xml:lang="en">
-    <terms>
-        <term name="et-al">{{jats}}&lt;etal/&gt;{{/jats}}</term>
-    </terms>
-  </locale>
-  <macro name="citation-number">
-    <text variable="citation-number" prefix="{{jats}}id=&quot;ref-{{/jats}}" suffix="{{jats}}&quot;&gt;{{/jats}}"/>
-  </macro>
-  <macro name="author">
-    <names variable="author" delimiter=" ">
-        <name prefix="{{jats}}&lt;name&gt;{{/jats}}" suffix="{{jats}}&lt;/name&gt;{{/jats}}" name-as-sort-order="all" sort-separator=" ">
-            <name-part name="family" text-case="capitalize-first" prefix="{{jats}}&lt;surname&gt;{{/jats}}" suffix="{{jats}}&lt;/surname&gt;{{/jats}}"/>
-            <name-part name="given" text-case="capitalize-first" prefix="{{jats}}&lt;given-names&gt;{{/jats}}" suffix="{{jats}}&lt;/given-names&gt;{{/jats}}"/>
-      </name>
-      <substitute>
-        <names variable="editor"/>
-      </substitute>
-    </names>
-  </macro>
-
-  <macro name="editor" delimiter=" ">
-    <names variable="editor" prefix="{{jats}}&lt;person-group person-group-type=&quot;editor&quot;&gt;{{/jats}}" suffix="{{jats}}&lt;/person-group&gt;{{/jats}}">
-      <name prefix="{{jats}}&lt;name&gt;{{/jats}}" suffix="{{jats}}&lt;/name&gt;{{/jats}}" name-as-sort-order="all" sort-separator=" ">
-        <name-part name="family" text-case="capitalize-first" prefix="{{jats}}&lt;surname&gt;{{/jats}}" suffix="{{jats}}&lt;/surname&gt;{{/jats}}"/>
-        <name-part name="given" text-case="capitalize-first" prefix="{{jats}}&lt;given-names&gt;{{/jats}}" suffix="{{jats}}&lt;/given-names&gt;{{/jats}}"/>
-      </name>
-      <substitute>
-        <names variable="editor"/>
-      </substitute>
-    </names>
-  </macro>
-
-  <macro name="editor">
-    <group delimiter=": ">
-      <names variable="editor">
-        <name prefix="{{jats}}&lt;name&gt;{{/jats}}" suffix="{{jats}}&lt;/name&gt;{{/jats}}" name-as-sort-order="all" sort-separator="">
-          <name-part name="family" text-case="capitalize-first" prefix="{{jats}}&lt;surname&gt;{{/jats}}" suffix="{{jats}}&lt;/surname&gt;{{/jats}}"/>
-          <name-part name="given" text-case="capitalize-first" prefix="{{jats}}&lt;given-names&gt;{{/jats}}" suffix="{{jats}}&lt;given-names&gt;{{/jats}}"/>
-        </name>
-      </names>
-    </group>
-  </macro>
-  <macro name="title">
-    <choose>
-      <if type="book" match="any">
-        <group prefix="{{jats}}&lt;source&gt;{{/jats}}" suffix="{{jats}}&lt;/source&gt;{{/jats}}">
-	        <text variable="title"/>
-				</group>
-			</if>
-      <else>
-        <group prefix="{{jats}}&lt;article-title&gt;{{/jats}}" suffix="{{jats}}&lt;/article-title&gt;{{/jats}}">
-	        <text variable="title"/>
-				</group>
-      </else>
-    </choose>
-  </macro>
-  <macro name="container-title">
-    <text variable="container-title" form="short" prefix="{{jats}}&lt;source&gt;{{/jats}}" suffix="{{jats}}&lt;/source&gt;{{/jats}}"/>
-  </macro>
-  <macro name="publisher">
-    <text variable="publisher" prefix="{{jats}}&lt;publisher-name&gt;{{/jats}}" suffix="{{jats}}&lt;/publisher-name&gt;{{/jats}}"/>
-    <text variable="publisher-place" prefix="{{jats}}&lt;publisher-loc&gt;{{/jats}}" suffix="{{jats}}&lt;/publisher-loc&gt;{{/jats}}"/>
-  </macro>
-  <macro name="link">
-    <choose>
-      <if match="any" variable="DOI">
-        <group prefix="{{jats}}&lt;pub-id pub-id-type=&quot;doi&quot;&gt;{{/jats}}" suffix="{{jats}}&lt;/pub-id&gt;{{/jats}}">
-          <text variable="DOI"/>
-        </group>
-      </if>
-    </choose>
-    <choose>
-      <if match="any" variable="PMID">
-        <group prefix="{{jats}}&lt;pub-id pub-id-type=&quot;pmid&quot;&gt;{{/jats}}" suffix="{{jats}}&lt;/pub-id&gt;{{/jats}}">
-          <text variable="PMID"/>
-        </group>
-      </if>
-    </choose>
-    <choose>
-      <if variable="URL" match="any">
-        <text variable="URL" />
-      </if>
-    </choose>
-  </macro>
-  <macro name="date">
-    <choose>
-      <if type="article-journal article-magazine article-newspaper report patent book" match="any">
-        <group prefix="{{jats}}&lt;date&gt;{{/jats}}" suffix="{{jats}}&lt;/date&gt;{{/jats}}">
-          <date variable="issued">
-            <date-part name="day" form="numeric-leading-zeros" prefix="{{jats}}&lt;day&gt;{{/jats}}" suffix="{{jats}}&lt;/day&gt;{{/jats}}"/>
-            <date-part name="month" form="numeric-leading-zeros" prefix="{{jats}}&lt;month&gt;{{/jats}}" suffix="{{jats}}&lt;/month&gt;{{/jats}}"/>
-            <date-part name="year" prefix="{{jats}}&lt;year&gt;{{/jats}}" suffix="{{jats}}&lt;/year&gt;{{/jats}}"/>
-          </date>
-        </group>
-      </if>
-      <else>
-        <group prefix="{{jats}}&lt;date-in-citation content-type=&quot;access-date&quot;{{/jats}}" suffix="{{jats}}&lt;/date-in-citation&gt;{{/jats}}">
-          <date variable="accessed" prefix="{{jats}} iso-8601-date=&quot;{{/jats}}" suffix="{{jats}}&quot;&gt;{{/jats}}">
-            <date-part name="year"/>
-            <date-part name="month" form="numeric-leading-zeros" prefix="{{jats}}-{{/jats}}"/>
-            <date-part name="day" form="numeric-leading-zeros" prefix="{{jats}}-{{/jats}}"/>
-          </date>
-          <date variable="accessed">
-            <date-part name="day" prefix="{{jats}}&lt;day&gt;{{/jats}}" suffix="{{jats}}&lt;/day&gt;{{/jats}}"/>
-            <date-part name="month" form="numeric-leading-zeros" prefix="{{jats}}&lt;month&gt;{{/jats}}" suffix="{{jats}}&lt;/month&gt;{{/jats}}"/>
-            <date-part name="year" prefix="{{jats}}&lt;year&gt;{{/jats}}" suffix="{{jats}}&lt;/year&gt;{{/jats}}"/>
-          </date>
-        </group>
-      </else>
-    </choose>
-  </macro>
-  <macro name="location">
-    <choose>
-      <if type="article-journal article-magazine" match="any">
-        <text variable="volume" prefix="{{jats}}&lt;volume&gt;{{/jats}}" suffix="{{jats}}&lt;/volume&gt;{{/jats}}"/>
-        <text variable="issue" prefix="{{jats}}&lt;issue&gt;{{/jats}}" suffix="{{jats}}&lt;/issue&gt;{{/jats}}"/>
-      </if>
-    </choose>
-    <choose>
-      <if type="article-journal article-magazine article-newspaper chapter" match="any">
-        <text variable="page-first" prefix="{{jats}}&lt;fpage&gt;{{/jats}}" suffix="{{jats}}&lt;/fpage&gt;{{/jats}}"/>
-      </if>
-    </choose>
-  </macro>
-  <macro name="publication-type">
-    <group prefix="{{jats}} publication-type=&quot;{{/jats}}" suffix="{{jats}}&quot;&gt;{{/jats}}">
-      <choose>
-        <if type="article-journal article-magazine article-newspaper" match="any">
-          <text value="journal"/>
-        </if>
-        <else-if type="book" match="any">
-          <text value="book"/>
-        </else-if>
-        <else-if type="chapter" match="any">
-          <text value="bookchapter"/>
-        </else-if>
-        <else-if type="dataset" match="any">
-          <text value="dataset"/>
-        </else-if>
-        <else-if type="patent" match="any">
-          <text value="patent"/>
-        </else-if>
-        <else-if type="report" match="any">
-          <text value="report"/>
-        </else-if>
-        <else-if type="review" match="any">
-          <text value="review"/>
-        </else-if>
-        <else>
-          <text value="standard"/>
-        </else>
-      </choose>
-    </group>
-  </macro>
-  <citation collapse="citation-number">
-    <sort>
-      <key variable="citation-number"/>
-    </sort>
-    <layout delimiter=",">
-      <group prefix="{{jats}}&lt;xref ref-type=&quot;bibr&quot; rid=&quot;{{/jats}}" suffix="{{jats}}&lt;/xref&gt;{{/jats}}">
-        <text variable="citation-number" prefix="{{jats}}ref-{{/jats}}" suffix="{{jats}}&quot;&gt;{{/jats}}"/>
-        <text variable="citation-number"/>
-      </group>
-    </layout>
-  </citation>
-  <bibliography sort-separator="">
-    <layout>
-      <group prefix="{{jats}}&lt;ref {{/jats}}" suffix="{{jats}}&lt;/ref&gt;{{/jats}}">
-        <text macro="citation-number"/>
-        <group prefix="{{jats}}&lt;element-citation{{/jats}}" suffix="{{jats}}&lt;/element-citation&gt;{{/jats}}">
-          <text macro="publication-type"/>
-          <text macro="author" prefix="{{jats}}&lt;person-group person-group-type=&quot;author&quot;&gt;{{/jats}}" suffix="{{jats}}&lt;/person-group&gt;{{/jats}}"/>
-          <text macro="title" />
-          <text macro="container-title"/>
-          <text macro="editor"/>
-          <text macro="publisher"/>
-          <text macro="date"/>
-          <text macro="location"/>
-          <text macro="link"/>
-        </group>
-      </group>
-    </layout>
-  </bibliography>
-</style>