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| author | John MacFarlane <jgm@berkeley.edu> | 2020-09-06 16:25:16 -0700 |
|---|---|---|
| committer | John MacFarlane <jgm@berkeley.edu> | 2020-09-21 10:15:50 -0700 |
| commit | e0984a43a99231e72c02a0a716c8d0315de9abdf (patch) | |
| tree | 8531ef58c2470d372ff2427a6ae09a6284461471 /test/command/jats.csl | |
| parent | 89c577befb78b32a0884b6092e0415c0dcadab72 (diff) | |
| download | pandoc-e0984a43a99231e72c02a0a716c8d0315de9abdf.tar.gz | |
Add built-in citation support using new citeproc library.
This deprecates the use of the external pandoc-citeproc
filter; citation processing is now built in to pandoc.
* Add dependency on citeproc library.
* Add Text.Pandoc.Citeproc module (and some associated unexported
modules under Text.Pandoc.Citeproc). Exports `processCitations`.
[API change]
* Add data files needed for Text.Pandoc.Citeproc: default.csl
in the data directory, and a citeproc directory that is just
used at compile-time. Note that we've added file-embed as a mandatory
rather than a conditional depedency, because of the biblatex
localization files. We might eventually want to use readDataFile
for this, but it would take some code reorganization.
* Text.Pandoc.Loging: Add `CiteprocWarning` to `LogMessage` and use it
in `processCitations`. [API change]
* Add tests from the pandoc-citeproc package as command tests (including
some tests pandoc-citeproc did not pass).
* Remove instructions for building pandoc-citeproc from CI and
release binary build instructions. We will no longer distribute
pandoc-citeproc.
* Markdown reader: tweak abbreviation support. Don't insert a
nonbreaking space after a potential abbreviation if it comes right before
a note or citation. This messes up several things, including citeproc's
moving of note citations.
* Add `csljson` as and input and output format. This allows pandoc
to convert between `csljson` and other bibliography formats,
and to generate formatted versions of CSL JSON bibliographies.
* Add module Text.Pandoc.Writers.CslJson, exporting `writeCslJson`. [API
change]
* Add module Text.Pandoc.Readers.CslJson, exporting `readCslJson`. [API
change]
* Added `bibtex`, `biblatex` as input formats. This allows pandoc
to convert between BibLaTeX and BibTeX and other bibliography formats,
and to generated formatted versions of BibTeX/BibLaTeX bibliographies.
* Add module Text.Pandoc.Readers.BibTeX, exporting `readBibTeX` and
`readBibLaTeX`. [API change]
* Make "standalone" implicit if output format is a bibliography format.
This is needed because pandoc readers for bibliography formats put
the bibliographic information in the `references` field of metadata;
and unless standalone is specified, metadata gets ignored.
(TODO: This needs improvement. We should trigger standalone for the
reader when the input format is bibliographic, and for the writer
when the output format is markdown.)
* Carry over `citationNoteNum` to `citationNoteNumber`. This was just
ignored in pandoc-citeproc.
* Text.Pandoc.Filter: Add `CiteprocFilter` constructor to Filter.
[API change] This runs the processCitations transformation.
We need to treat it like a filter so it can be placed
in the sequence of filter runs (after some, before others).
In FromYAML, this is parsed from `citeproc` or `{type: citeproc}`,
so this special filter may be specified either way in a defaults file
(or by `citeproc: true`, though this gives no control of positioning
relative to other filters). TODO: we need to add something to the
manual section on defaults files for this.
* Add deprecation warning if `upandoc-citeproc` filter is used.
* Add `--citeproc/-C` option to trigger citation processing.
This behaves like a filter and will be positioned
relative to filters as they appear on the command line.
* Rewrote the manual on citatations, adding a dedicated Citations
section which also includes some information formerly found in
the pandoc-citeproc man page.
* Look for CSL styles in the `csl` subdirectory of the pandoc user data
directory. This changes the old pandoc-citeproc behavior, which looked
in `~/.csl`. Users can simply symlink `~/.csl` to the `csl`
subdirectory of their pandoc user data directory if they want
the old behavior.
* Add support for CSL bibliography entry formatting to LaTeX, HTML,
Ms writers. Added CSL-related CSS to styles.html.
Diffstat (limited to 'test/command/jats.csl')
| -rw-r--r-- | test/command/jats.csl | 208 |
1 files changed, 208 insertions, 0 deletions
diff --git a/test/command/jats.csl b/test/command/jats.csl new file mode 100644 index 000000000..64872863c --- /dev/null +++ b/test/command/jats.csl @@ -0,0 +1,208 @@ +<?xml version="1.0" encoding="utf-8"?> +<style xmlns="http://purl.org/net/xbiblio/csl" class="in-text" version="1.0" default-locale="en-US"> + <info> + <title>Journal Article Tag Suite</title> + <title-short>JATS</title-short> + <id>http://www.zotero.org/styles/journal-article-tag-suite</id> + <link href="https://github.com/MartinPaulEve/JATS-CSL/blob/master/jats.csl" rel="self"/> + <link rel="documentation" href="http://jats.nlm.nih.gov/archiving/tag-library/1.0/index.html"/> + <author> + <name>Martin Paul Eve</name> + <email>martin@martineve.com</email> + </author> + <category citation-format="numeric"/> + <category field="medicine"/> + <category field="biology"/> + <summary>Use this style to generate bibliographic data in Journal Article Tagging Suite (JATS) 1.0 XML format</summary> + <updated>2014-06-21T17:41:26+00:00</updated> + <rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License. Originally by Martin Fenner.</rights> + </info> + <locale xml:lang="en"> + <terms> + <term name="et-al">{{jats}}<etal/>{{/jats}}</term> + </terms> + </locale> + <macro name="citation-number"> + <text variable="citation-number" prefix="{{jats}}id="ref-{{/jats}}" suffix="{{jats}}">{{/jats}}"/> + </macro> + <macro name="author"> + <names variable="author"> + <name prefix="{{jats}}<name>{{/jats}}" suffix="{{jats}}</name>{{/jats}}" name-as-sort-order="all" sort-separator=""> + <name-part name="family" text-case="capitalize-first" prefix="{{jats}}<surname>{{/jats}}" suffix="{{jats}}</surname>{{/jats}}"/> + <name-part name="given" text-case="capitalize-first" prefix="{{jats}}<given-names>{{/jats}}" suffix="{{jats}}</given-names>{{/jats}}"/> + </name> + <substitute> + <names variable="editor"/> + </substitute> + </names> + </macro> + + <macro name="editor"> + <names variable="editor" prefix="{{jats}}<person-group person-group-type="editor">{{/jats}}" suffix="{{jats}}</person-group>{{/jats}}"> + <name prefix="{{jats}}<name>{{/jats}}" suffix="{{jats}}</name>{{/jats}}" name-as-sort-order="all" sort-separator=""> + <name-part name="family" text-case="capitalize-first" prefix="{{jats}}<surname>{{/jats}}" suffix="{{jats}}</surname>{{/jats}}"/> + <name-part name="given" text-case="capitalize-first" prefix="{{jats}}<given-names>{{/jats}}" suffix="{{jats}}</given-names>{{/jats}}"/> + </name> + <substitute> + <names variable="editor"/> + </substitute> + </names> + </macro> + + <macro name="editor"> + <group delimiter=": "> + <names variable="editor"> + <name prefix="{{jats}}<name>{{/jats}}" suffix="{{jats}}</name>{{/jats}}" name-as-sort-order="all" sort-separator=""> + <name-part name="family" text-case="capitalize-first" prefix="{{jats}}<surname>{{/jats}}" suffix="{{jats}}</surname>{{/jats}}"/> + <name-part name="given" text-case="capitalize-first" prefix="{{jats}}<given-names>{{/jats}}" suffix="{{jats}}<given-names>{{/jats}}"/> + </name> + </names> + </group> + </macro> + <macro name="title"> + <choose> + <if type="book" match="any"> + <group prefix="{{jats}}<source>{{/jats}}" suffix="{{jats}}</source>{{/jats}}"> + <text variable="title"/> + </group> + </if> + <else> + <group prefix="{{jats}}<article-title>{{/jats}}" suffix="{{jats}}</article-title>{{/jats}}"> + <text variable="title"/> + </group> + </else> + </choose> + </macro> + <macro name="container-title"> + <text variable="container-title" form="short" prefix="{{jats}}<source>{{/jats}}" suffix="{{jats}}</source>{{/jats}}"/> + </macro> + <macro name="publisher"> + <text variable="publisher" prefix="{{jats}}<publisher-name>{{/jats}}" suffix="{{jats}}</publisher-name>{{/jats}}"/> + <text variable="publisher-place" prefix="{{jats}}<publisher-loc>{{/jats}}" suffix="{{jats}}</publisher-loc>{{/jats}}"/> + </macro> + <macro name="link"> + <choose> + <if match="any" variable="DOI"> + <group prefix="{{jats}}<pub-id pub-id-type="doi">{{/jats}}" suffix="{{jats}}</pub-id>{{/jats}}"> + <text variable="DOI"/> + </group> + </if> + </choose> + <choose> + <if match="any" variable="PMID"> + <group prefix="{{jats}}<ext-link ext-link-type="pmid" {{/jats}}" suffix="{{jats}}</ext-link>{{/jats}}"> + <text variable="PMID" prefix="{{jats}}xlink:href="http://www.ncbi.nlm.nih.gov/pubmed/{{/jats}}" suffix="{{jats}}" xlink:type="simple">{{/jats}}"/> + <text variable="PMID"/> + </group> + </if> + </choose> + <choose> + <if variable="URL" match="any"> + <group prefix="{{jats}}<ext-link ext-link-type="uri" {{/jats}}" suffix="{{jats}}</ext-link>{{/jats}}"> + <text variable="URL" prefix="{{jats}}xlink:href="{{/jats}}" suffix="{{jats}}" xlink:type="simple">{{/jats}}"/> + <text variable="URL"/> + </group> + </if> + </choose> + </macro> + <macro name="date"> + <choose> + <if type="article-journal article-magazine article-newspaper report patent book" match="any"> + <group prefix="{{jats}}<date>{{/jats}}" suffix="{{jats}}</date>{{/jats}}"> + <date variable="issued"> + <date-part name="day" form="numeric-leading-zeros" prefix="{{jats}}<day>{{/jats}}" suffix="{{jats}}</day>{{/jats}}"/> + <date-part name="month" form="numeric-leading-zeros" prefix="{{jats}}<month>{{/jats}}" suffix="{{jats}}</month>{{/jats}}"/> + <date-part name="year" prefix="{{jats}}<year>{{/jats}}" suffix="{{jats}}</year>{{/jats}}"/> + </date> + </group> + </if> + <else> + <group prefix="{{jats}}<date-in-citation content-type="access-date"{{/jats}}" suffix="{{jats}}</date-in-citation>{{/jats}}"> + <date variable="accessed" prefix="{{jats}} iso-8601-date="{{/jats}}" suffix="{{jats}}">{{/jats}}"> + <date-part name="year"/> + <date-part name="month" form="numeric-leading-zeros" prefix="{{jats}}-{{/jats}}"/> + <date-part name="day" form="numeric-leading-zeros" prefix="{{jats}}-{{/jats}}"/> + </date> + <date variable="accessed"> + <date-part name="day" prefix="{{jats}}<day>{{/jats}}" suffix="{{jats}}</day>{{/jats}}"/> + <date-part name="month" form="numeric-leading-zeros" prefix="{{jats}}<month>{{/jats}}" suffix="{{jats}}</month>{{/jats}}"/> + <date-part name="year" prefix="{{jats}}<year>{{/jats}}" suffix="{{jats}}</year>{{/jats}}"/> + </date> + </group> + </else> + </choose> + </macro> + <macro name="location"> + <choose> + <if type="article-journal article-magazine" match="any"> + <text variable="volume" prefix="{{jats}}<volume>{{/jats}}" suffix="{{jats}}</volume>{{/jats}}"/> + <text variable="issue" prefix="{{jats}}<issue>{{/jats}}" suffix="{{jats}}</issue>{{/jats}}"/> + </if> + </choose> + <choose> + <if type="article-journal article-magazine article-newspaper chapter" match="any"> + <text variable="page-first" prefix="{{jats}}<fpage>{{/jats}}" suffix="{{jats}}</fpage>{{/jats}}"/> + </if> + </choose> + </macro> + <macro name="publication-type"> + <group prefix="{{jats}} publication-type="{{/jats}}" suffix="{{jats}}">{{/jats}}"> + <choose> + <if type="article-journal article-magazine article-newspaper" match="any"> + <text value="journal"/> + </if> + <else-if type="book" match="any"> + <text value="book"/> + </else-if> + <else-if type="chapter" match="any"> + <text value="bookchapter"/> + </else-if> + <else-if type="dataset" match="any"> + <text value="dataset"/> + </else-if> + <else-if type="patent" match="any"> + <text value="patent"/> + </else-if> + <else-if type="report" match="any"> + <text value="report"/> + </else-if> + <else-if type="review" match="any"> + <text value="review"/> + </else-if> + <else> + <text value="standard"/> + </else> + </choose> + </group> + </macro> + <citation collapse="citation-number"> + <sort> + <key variable="citation-number"/> + </sort> + <layout delimiter=","> + <group prefix="{{jats}}<xref ref-type="bibr" rid="{{/jats}}" suffix="{{jats}}</xref>{{/jats}}"> + <text variable="citation-number" prefix="{{jats}}ref-{{/jats}}" suffix="{{jats}}">{{/jats}}"/> + <text variable="citation-number"/> + </group> + </layout> + </citation> + <bibliography sort-separator=""> + <layout> + <group prefix="{{jats}}<ref {{/jats}}" suffix="{{jats}}</ref>{{/jats}}"> + <text macro="citation-number"/> + <group prefix="{{jats}}<element-citation{{/jats}}" suffix="{{jats}}</element-citation>{{/jats}}"> + <text macro="publication-type"/> + <text macro="author" prefix="{{jats}}<person-group person-group-type="author">{{/jats}}" suffix="{{jats}}</person-group>{{/jats}}"/> + <text macro="title" /> + <text macro="container-title"/> + <text macro="editor"/> + <text macro="publisher"/> + <text macro="date"/> + <text macro="location"/> + <text macro="link"/> + </group> + </group> + </layout> + </bibliography> +</style> + |