From 542272a52acc9c5e051b0e7336ab97572f60b461 Mon Sep 17 00:00:00 2001
From: John MacFarlane <jgm@berkeley.edu>
Date: Tue, 26 Mar 2019 21:43:59 -0700
Subject: JATS writer: Ensure that plain strings go inside `<pub-id>` tag.

See #5397.
---
 src/Text/Pandoc/Writers/JATS.hs | 10 +++++++++-
 1 file changed, 9 insertions(+), 1 deletion(-)

diff --git a/src/Text/Pandoc/Writers/JATS.hs b/src/Text/Pandoc/Writers/JATS.hs
index ac438a9ff..6cbe35bdc 100644
--- a/src/Text/Pandoc/Writers/JATS.hs
+++ b/src/Text/Pandoc/Writers/JATS.hs
@@ -319,7 +319,15 @@ tableItemToJATS opts isHeader item =
 
 -- | Convert a list of inline elements to JATS.
 inlinesToJATS :: PandocMonad m => WriterOptions -> [Inline] -> JATS m Doc
-inlinesToJATS opts lst = hcat <$> mapM (inlineToJATS opts) lst
+inlinesToJATS opts lst = hcat <$> mapM (inlineToJATS opts) (fixCitations lst)
+  where
+   fixCitations [] = []
+   fixCitations (x@(RawInline (Format "jats") "<pub-id pub-id-type=\"doi\">") : xs) =
+     let isRawInline (RawInline{}) = True
+         isRawInline _             = False
+         (ys,zs)                   = break isRawInline xs
+         in x : Str (stringify ys) : fixCitations zs
+   fixCitations (x:xs) = x : fixCitations xs
 
 -- | Convert an inline element to JATS.
 inlineToJATS :: PandocMonad m => WriterOptions -> Inline -> JATS m Doc
-- 
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