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path: root/src/Text/Pandoc/Citeproc.hs
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2021-02-26Fix/update URLs and use HTTP**S** where possible (#7122)Salim B1-1/+1
2021-01-21Text.Pandoc.Citeproc: use finer grained importsAlbert Krewinkel1-18/+21
This allows to import the module in writers without causing a circular dependency.
2021-01-10T.P.Citeproc: factor out and export `getStyle`.John MacFarlane1-45/+55
2021-01-10T.P.Citeproc: factor out getLang.John MacFarlane1-8/+15
2021-01-10T.P.Citeproc: refactor and export `getReferences`.John MacFarlane1-28/+51
See #7016.
2020-12-24Citeproc: fix handling of empty URL variables (`DOI`, etc.).John MacFarlane1-1/+3
The `linkifyVariables` function was changing these to links which then got treated as non-empty by citeproc, leading to wrong results (e.g. ignoring nonempty URL when empty DOI is present). Addresses part 2 of jgm/citeproc#41.
2020-12-16Fix citeproc regression with duplicate references.John MacFarlane1-1/+2
- Use dev version of citeproc, which handles duplicate ids better, preferring the last one in the list and discarding the rest. - Ensure that inline citations take priority over external ones. See jgm/citeproc#36. This restores the behavior of pandoc-citeproc.
2020-12-15Use fetchItem to get external bibliography.John MacFarlane1-8/+7
This means that: - a URL may be provided, and pandoc will fetch the resource. - Pandoc will search the resource path for the bibliography if it is not found relative to the working directory. Closes #6940.
2020-12-15Allow both inline and external references to be usedJohn MacFarlane1-14/+15
with `--citeproc`. This fixes a regression, since pandoc-citeproc allowed these to be combined. Closes #6951.
2020-12-02Citeproc: ensure that BCP47 lang codes can be used.John MacFarlane1-2/+17
We ignore the variants and just use the base lang code and country code when passing off to citeproc.
2020-11-25Fix truncation of `[Citation]` list in `Cite` inside footnotes...John MacFarlane1-2/+2
This affected author-in-text citations in footnotes. It didn't cause problems for the printed output, but for filters that expected the citation id and other information. Closes #6890.
2020-11-13Improve period suppression algorithm for citations in notes...John MacFarlane1-1/+22
in note citation styles. See #6835.
2020-11-07Lint code in PRs and when committing to master (#6790)Albert Krewinkel1-5/+1
* Remove unused LANGUAGE pragmata * Apply HLint suggestions * Configure HLint to ignore some warnings * Lint code when committing to master
2020-11-05Citeproc: improve punctuation in in-text note citations.John MacFarlane1-8/+15
Previously in-text note citations inside a footnote would sometimes have the final period stripped, even if it was needed (e.g. on the end of 'ibid'). See #6813.
2020-11-04Simplified idpred in citeproc.John MacFarlane1-2/+1
2020-11-01Citeproc: use comma for in-text citations inside footnotes.John MacFarlane1-8/+18
When an author-in-text citation like `@foo` occurs in a footnote, we now render it with: `AUTHOR NAME + COMMA + SPACE + REST`. Previously we rendered: `AUTHOR NAME + SPACE + "(" + REST + ")"`. This gives better results. Note that normal citations are still rendered in parentheses.
2020-11-01Improve deNote.John MacFarlane1-4/+5
2020-10-29Use new citeproc; do note capitalization here, not in citeproc.John MacFarlane1-2/+11
2020-10-27Remove obsolete commentJohn MacFarlane1-1/+0
2020-10-27Citeproc: properly handle `csl` field with `data:` URI.John MacFarlane1-1/+1
This is used with the JATS writer, so this fixes a regression in pandoc 2.11 with JATS output and citeproc. Closes #6783.
2020-10-26Add PandocBibliographyError and use it in parsing bibliographies.John MacFarlane1-5/+7
This ensures that bibliography parsing errors generate messages that include the bibliography file name -- otherwise it can be quite mysterious where it is coming from. [API change] New PandocBibliographyError constructor on PandocError type.
2020-10-21citeproc - improved removal of final period...John MacFarlane1-5/+8
...in citations inside notes in note-based styles. These citations are put in parentheses, but the final period must be removed. See jgm/citeproc#20
2020-10-14Fix typos in comments, doc strings, error messages, and testsAlbert Krewinkel1-4/+1
Typos reported by https://fossies.org/linux/test/pandoc-master.tar.gz/codespell.html See: #6738
2020-10-09In fetching parent of dependent CSL style, first...John MacFarlane1-1/+5
look locally, and only do an HTTP request if it's not found locally.
2020-10-07Raise informative errors when YAML metadata parsing fails.John MacFarlane1-2/+4
Closes #6730. Previously the command would succeed, returning empty metadata, with no errors or warnings. API changes: - Remove now unused CouldNotParseYamlMetadata constructor for LogMessage (T.P.Logging). - Add 'Maybe FilePath' parameter to yamlToMeta in T.P.Readers.Markdown.
2020-10-07Cleaner solution to #6723.John MacFarlane1-4/+4
2020-10-07Fix URL prefixes in citations also when they occur in notes.John MacFarlane1-3/+3
Update chicago-fullnote-bibliography.csl and adjust tests. Closes #6723.
2020-10-06Incorporate `https://doi.org/` prefix added by CSL style...John MacFarlane1-1/+12
...into linked DOI, and similarly for other URLs linked in the bibliography. We want to avoid having a URL in which only the latter part is linked. Closes #6723.
2020-10-06Fix URL for "short DOIs" in citations. See #6723.John MacFarlane1-1/+6
Short DOIs begin 10/abcd and should be links to `https://doi.org/abcd` (omitting the `10/`).
2020-10-05Fixed regresison in last commit.John MacFarlane1-1/+1
Parsing of YAML bibliographies was broken; this fixes it.
2020-10-05Removed the idpred from metaValueToReference.John MacFarlane1-3/+2
This isn't really necessary; we do filtering at other points now.
2020-10-05Add yamlToRefs, yamlBsToRefs.John MacFarlane1-7/+5
T.P.Readers.Markdown now exports yamlToRefs. [API change] T.P.Readers.Metadata exports yamlBsToRefs. [API change] These allow specifying an id filter so we parse only references that are used in the document. Improves timing with a 3M yaml references file from 36s to 17s.
2020-10-05Improve searching for CSL files...John MacFarlane1-6/+15
...and CSL abbreviation files. Use resource path to search in both USERDATADIR/csl and USERDATADIR/csl/dependent. Also, add .csl or .json extension as needed, so you can just do --csl zoology.
2020-10-05Use yamlToMeta for yaml bibliographyJohn MacFarlane1-5/+4
This speeds up parsing of external yaml bibliographies considerably (in one test 36s -> 17s).
2020-10-05Add filtering to metaValueToReference, and check other-ids field too.John MacFarlane1-4/+5
2020-09-24Slight improvement to last commit.John MacFarlane1-1/+4
We now add a space only if there isn't already one. (Some styles add a space at the end of the left-margin div.)
2020-09-24Citeproc: Insert space after csl-left-margin span contents...John MacFarlane1-2/+16
if they come before csl-right-inline. This ensures that the citation number or label will be separated from the rest by a space, even in formats (like plain) that don't yet have special handling for the display spans.
2020-09-21Add built-in citation support using new citeproc library.John MacFarlane1-0/+492
This deprecates the use of the external pandoc-citeproc filter; citation processing is now built in to pandoc. * Add dependency on citeproc library. * Add Text.Pandoc.Citeproc module (and some associated unexported modules under Text.Pandoc.Citeproc). Exports `processCitations`. [API change] * Add data files needed for Text.Pandoc.Citeproc: default.csl in the data directory, and a citeproc directory that is just used at compile-time. Note that we've added file-embed as a mandatory rather than a conditional depedency, because of the biblatex localization files. We might eventually want to use readDataFile for this, but it would take some code reorganization. * Text.Pandoc.Loging: Add `CiteprocWarning` to `LogMessage` and use it in `processCitations`. [API change] * Add tests from the pandoc-citeproc package as command tests (including some tests pandoc-citeproc did not pass). * Remove instructions for building pandoc-citeproc from CI and release binary build instructions. We will no longer distribute pandoc-citeproc. * Markdown reader: tweak abbreviation support. Don't insert a nonbreaking space after a potential abbreviation if it comes right before a note or citation. This messes up several things, including citeproc's moving of note citations. * Add `csljson` as and input and output format. This allows pandoc to convert between `csljson` and other bibliography formats, and to generate formatted versions of CSL JSON bibliographies. * Add module Text.Pandoc.Writers.CslJson, exporting `writeCslJson`. [API change] * Add module Text.Pandoc.Readers.CslJson, exporting `readCslJson`. [API change] * Added `bibtex`, `biblatex` as input formats. This allows pandoc to convert between BibLaTeX and BibTeX and other bibliography formats, and to generated formatted versions of BibTeX/BibLaTeX bibliographies. * Add module Text.Pandoc.Readers.BibTeX, exporting `readBibTeX` and `readBibLaTeX`. [API change] * Make "standalone" implicit if output format is a bibliography format. This is needed because pandoc readers for bibliography formats put the bibliographic information in the `references` field of metadata; and unless standalone is specified, metadata gets ignored. (TODO: This needs improvement. We should trigger standalone for the reader when the input format is bibliographic, and for the writer when the output format is markdown.) * Carry over `citationNoteNum` to `citationNoteNumber`. This was just ignored in pandoc-citeproc. * Text.Pandoc.Filter: Add `CiteprocFilter` constructor to Filter. [API change] This runs the processCitations transformation. We need to treat it like a filter so it can be placed in the sequence of filter runs (after some, before others). In FromYAML, this is parsed from `citeproc` or `{type: citeproc}`, so this special filter may be specified either way in a defaults file (or by `citeproc: true`, though this gives no control of positioning relative to other filters). TODO: we need to add something to the manual section on defaults files for this. * Add deprecation warning if `upandoc-citeproc` filter is used. * Add `--citeproc/-C` option to trigger citation processing. This behaves like a filter and will be positioned relative to filters as they appear on the command line. * Rewrote the manual on citatations, adding a dedicated Citations section which also includes some information formerly found in the pandoc-citeproc man page. * Look for CSL styles in the `csl` subdirectory of the pandoc user data directory. This changes the old pandoc-citeproc behavior, which looked in `~/.csl`. Users can simply symlink `~/.csl` to the `csl` subdirectory of their pandoc user data directory if they want the old behavior. * Add support for CSL bibliography entry formatting to LaTeX, HTML, Ms writers. Added CSL-related CSS to styles.html.
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