From f5ea5f0aad1d5000b326ce4c45c92fdfb1a4b5d3 Mon Sep 17 00:00:00 2001
From: Albert Krewinkel <albert@zeitkraut.de>
Date: Thu, 13 Feb 2020 05:36:02 +0100
Subject: Introduce new format variants for JATS (#6067)

New formats:

- `jats_archiving` for the "Archiving and Interchange Tag Set",
- `jats_publishing` for the "Journal Publishing Tag Set", and
- `jats_articleauthoring` for the "Article Authoring Tag Set."

The "jats" output format is now an alias for "jats_archiving".

Closes: #6014
---
 data/templates/article.jats_publishing       | 195 ++++++++++++++++++++++++++
 data/templates/default.jats                  | 200 ---------------------------
 data/templates/default.jats_archiving        |   7 +
 data/templates/default.jats_articleauthoring |  90 ++++++++++++
 data/templates/default.jats_publishing       |   7 +
 5 files changed, 299 insertions(+), 200 deletions(-)
 create mode 100644 data/templates/article.jats_publishing
 delete mode 100644 data/templates/default.jats
 create mode 100644 data/templates/default.jats_archiving
 create mode 100644 data/templates/default.jats_articleauthoring
 create mode 100644 data/templates/default.jats_publishing

(limited to 'data')

diff --git a/data/templates/article.jats_publishing b/data/templates/article.jats_publishing
new file mode 100644
index 000000000..ce184c0ed
--- /dev/null
+++ b/data/templates/article.jats_publishing
@@ -0,0 +1,195 @@
+$if(article.type)$
+<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="1.2" article-type="$article.type$">
+$else$
+<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="1.2" article-type="other">
+$endif$
+<front>
+<journal-meta>
+$if(journal.publisher-id)$
+<journal-id journal-id-type="publisher-id">$journal.publisher-id$</journal-id>
+$endif$
+$if(journal.nlm-ta)$
+<journal-id journal-id-type="nlm-ta">$journal.nlm-ta$</journal-id>
+$endif$
+$if(journal.pmc)$
+<journal-id journal-id-type="pmc">$journal.pmc$</journal-id>
+$endif$
+<journal-title-group>
+$if(journal.title)$
+<journal-title>$journal.title$</journal-title>
+$endif$
+$if(journal.abbrev-title)$
+<abbrev-journal-title>$journal.abbrev-title$</abbrev-journal-title>
+$endif$
+</journal-title-group>
+$if(journal.pissn)$
+<issn pub-type="ppub">$journal.pissn$</issn>
+$endif$
+$if(journal.eissn)$
+<issn pub-type="epub">$journal.eissn$</issn>
+$endif$
+<publisher>
+<publisher-name>$journal.publisher-name$</publisher-name>
+$if(journal.publisher-loc)$
+<publisher-loc>$journal.publisher-loc$</publisher-loc>
+$endif$
+</publisher>
+</journal-meta>
+<article-meta>
+$if(article.publisher-id)$
+<article-id pub-id-type="publisher-id">$article.publisher-id$</article-id>
+$endif$
+$if(article.doi)$
+<article-id pub-id-type="doi">$article.doi$</article-id>
+$endif$
+$if(article.pmid)$
+<article-id pub-id-type="pmid">$article.pmid$</article-id>
+$endif$
+$if(article.pmcid)$
+<article-id pub-id-type="pmcid">$article.pmcid$</article-id>
+$endif$
+$if(article.art-access-id)$
+<article-id pub-id-type="art-access-id">$article.art-access-id$</article-id>
+$endif$
+$if(article.heading)$
+<article-categories>
+<subj-group subj-group-type="heading">
+<subject>$article.heading$</subject>
+</subj-group>
+$if(article.categories)$
+<subj-group subj-group-type="categories">
+$for(article.categories)$
+<subject>$article.categories$</subject>
+$endfor$
+</subj-group>
+$endif$
+</article-categories>
+$endif$
+$if(title)$
+<title-group>
+<article-title>$title$</article-title>
+</title-group>
+$endif$
+$if(author)$
+<contrib-group>
+$for(author)$
+<contrib contrib-type="author">
+$if(author.orcid)$
+<contrib-id contrib-id-type="orcid">$author.orcid$</contrib-id>
+$endif$
+$if(author.surname)$
+<name>
+<surname>$author.surname$</surname>
+<given-names>$author.given-names$</given-names>
+</name>
+$else$
+<string-name>$author$</string-name>
+$endif$
+$if(author.email)$
+<email>$author.email$</email>
+$endif$
+$if(author.aff-id)$
+<xref ref-type="aff" rid="aff-$contrib.aff-id$"/>
+$endif$
+$if(author.cor-id)$
+<xref ref-type="corresp" rid="cor-$author.cor-id$"><sup>*</sup></xref>
+$endif$
+</contrib>
+$endfor$
+</contrib-group>
+$endif$
+$if(article.author-notes)$
+<author-notes>
+$if(article.author-notes.corresp)$
+$for(article.author-notes.corresp)$
+<corresp id="cor-$article.author-notes.corresp.id$">* E-mail: <email>$article.author-notes.corresp.email$</email></corresp>
+$endfor$
+$endif$
+$if(article.author-notes.conflict)$
+<fn fn-type="conflict"><p>$article.author-notes.conflict$</p></fn>
+$endif$
+$if(article.author-notes.con)$
+<fn fn-type="con"><p>$article.author-notes.con$</p></fn>
+$endif$
+</author-notes>
+$endif$
+$if(date)$
+<pub-date pub-type="epub"$if(date.iso-8601)$ iso-8601-date="$date.iso-8601$"$endif$>
+$if(date.day)$
+<day>$date.day$</day>
+$endif$
+$if(date.month)$
+<month>$date.month$</month>
+$endif$
+<year>$date.year$</year>
+</pub-date>
+$endif$
+$if(article.volume)$
+<volume>$article.volume$</volume>
+$endif$
+$if(article.issue)$
+<issue>$article.issue$</issue>
+$endif$
+$if(article.fpage)$
+<fpage>$article.fpage$</fpage>
+$endif$
+$if(article.lpage)$
+<lpage>$article.lpage$</lpage>
+$endif$
+$if(article.elocation-id)$
+<elocation-id>$article.elocation-id$</elocation-id>
+$endif$
+$if(history)$
+<history>
+</history>
+$endif$
+$if(copyright)$
+<permissions>
+$if(copyright.statement)$
+<copyright-statement>$copyright.statement$</copyright-statement>
+$endif$
+$if(copyright.year)$
+<copyright-year>$copyright.year$</copyright-year>
+$endif$
+$if(copyright.holder)$
+<copyright-holder>$copyright.holder$</copyright-holder>
+$endif$
+$if(copyright.text)$
+<license license-type="$copyright.type$" xlink:href="$copyright.link$">
+<license-p>$copyright.text$</license-p>
+</license>
+$endif$
+</permissions>
+$endif$
+$if(abstract)$
+<abstract>
+$abstract$
+</abstract>
+$endif$
+$if(tags)$
+<kwd-group kwd-group-type="author">
+$for(tags)$
+<kwd>$tags$</kwd>
+$endfor$
+</kwd-group>
+$endif$
+$if(article.funding-statement)$
+<funding-group>
+<funding-statement>$article.funding-statement$</funding-statement>
+</funding-group>
+$endif$
+</article-meta>
+$if(notes)$
+<notes>$notes$</notes>
+$endif$
+</front>
+<body>
+$body$
+</body>
+<back>
+$if(back)$
+$back$
+$endif$
+</back>
+</article>
+
diff --git a/data/templates/default.jats b/data/templates/default.jats
deleted file mode 100644
index 20560cdc5..000000000
--- a/data/templates/default.jats
+++ /dev/null
@@ -1,200 +0,0 @@
-<?xml version="1.0" encoding="utf-8" ?>
-$if(xml-stylesheet)$
-<?xml-stylesheet type="text/xsl" href="$xml-stylesheet$"?>
-$endif$
-<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD v1.2 20190208//EN"
-                  "JATS-archivearticle1.dtd">
-$if(article.type)$
-<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="1.2" article-type="$article.type$">
-$else$
-<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="1.2" article-type="other">
-$endif$
-<front>
-<journal-meta>
-$if(journal.publisher-id)$
-<journal-id journal-id-type="publisher-id">$journal.publisher-id$</journal-id>
-$endif$
-$if(journal.nlm-ta)$
-<journal-id journal-id-type="nlm-ta">$journal.nlm-ta$</journal-id>
-$endif$
-$if(journal.pmc)$
-<journal-id journal-id-type="pmc">$journal.pmc$</journal-id>
-$endif$
-<journal-title-group>
-$if(journal.title)$
-<journal-title>$journal.title$</journal-title>
-$endif$
-$if(journal.abbrev-title)$
-<abbrev-journal-title>$journal.abbrev-title$</abbrev-journal-title>
-$endif$
-</journal-title-group>
-$if(journal.pissn)$
-<issn pub-type="ppub">$journal.pissn$</issn>
-$endif$
-$if(journal.eissn)$
-<issn pub-type="epub">$journal.eissn$</issn>
-$endif$
-<publisher>
-<publisher-name>$journal.publisher-name$</publisher-name>
-$if(journal.publisher-loc)$
-<publisher-loc>$journal.publisher-loc$</publisher-loc>
-$endif$
-</publisher>
-</journal-meta>
-<article-meta>
-$if(article.publisher-id)$
-<article-id pub-id-type="publisher-id">$article.publisher-id$</article-id>
-$endif$
-$if(article.doi)$
-<article-id pub-id-type="doi">$article.doi$</article-id>
-$endif$
-$if(article.pmid)$
-<article-id pub-id-type="pmid">$article.pmid$</article-id>
-$endif$
-$if(article.pmcid)$
-<article-id pub-id-type="pmcid">$article.pmcid$</article-id>
-$endif$
-$if(article.art-access-id)$
-<article-id pub-id-type="art-access-id">$article.art-access-id$</article-id>
-$endif$
-$if(article.heading)$
-<article-categories>
-<subj-group subj-group-type="heading">
-<subject>$article.heading$</subject>
-</subj-group>
-$if(article.categories)$
-<subj-group subj-group-type="categories">
-$for(article.categories)$
-<subject>$article.categories$</subject>
-$endfor$
-</subj-group>
-$endif$
-</article-categories>
-$endif$
-$if(title)$
-<title-group>
-<article-title>$title$</article-title>
-</title-group>
-$endif$
-$if(author)$
-<contrib-group>
-$for(author)$
-<contrib contrib-type="author">
-$if(author.orcid)$
-<contrib-id contrib-id-type="orcid">$author.orcid$</contrib-id>
-$endif$
-$if(author.surname)$
-<name>
-<surname>$author.surname$</surname>
-<given-names>$author.given-names$</given-names>
-</name>
-$else$
-<string-name>$author$</string-name>
-$endif$
-$if(author.email)$
-<email>$author.email$</email>
-$endif$
-$if(author.aff-id)$
-<xref ref-type="aff" rid="aff-$contrib.aff-id$"/>
-$endif$
-$if(author.cor-id)$
-<xref ref-type="corresp" rid="cor-$author.cor-id$"><sup>*</sup></xref>
-$endif$
-</contrib>
-$endfor$
-</contrib-group>
-$endif$
-$if(article.author-notes)$
-<author-notes>
-$if(article.author-notes.corresp)$
-$for(article.author-notes.corresp)$
-<corresp id="cor-$article.author-notes.corresp.id$">* E-mail: <email>$article.author-notes.corresp.email$</email></corresp>
-$endfor$
-$endif$
-$if(article.author-notes.conflict)$
-<fn fn-type="conflict"><p>$article.author-notes.conflict$</p></fn>
-$endif$
-$if(article.author-notes.con)$
-<fn fn-type="con"><p>$article.author-notes.con$</p></fn>
-$endif$
-</author-notes>
-$endif$
-$if(date)$
-<pub-date pub-type="epub"$if(date.iso-8601)$ iso-8601-date="$date.iso-8601$"$endif$>
-$if(date.day)$
-<day>$date.day$</day>
-$endif$
-$if(date.month)$
-<month>$date.month$</month>
-$endif$
-<year>$date.year$</year>
-</pub-date>
-$endif$
-$if(article.volume)$
-<volume>$article.volume$</volume>
-$endif$
-$if(article.issue)$
-<issue>$article.issue$</issue>
-$endif$
-$if(article.fpage)$
-<fpage>$article.fpage$</fpage>
-$endif$
-$if(article.lpage)$
-<lpage>$article.lpage$</lpage>
-$endif$
-$if(article.elocation-id)$
-<elocation-id>$article.elocation-id$</elocation-id>
-$endif$
-$if(history)$
-<history>
-</history>
-$endif$
-$if(copyright)$
-<permissions>
-$if(copyright.statement)$
-<copyright-statement>$copyright.statement$</copyright-statement>
-$endif$
-$if(copyright.year)$
-<copyright-year>$copyright.year$</copyright-year>
-$endif$
-$if(copyright.holder)$
-<copyright-holder>$copyright.holder$</copyright-holder>
-$endif$
-$if(copyright.text)$
-<license license-type="$copyright.type$" xlink:href="$copyright.link$">
-<license-p>$copyright.text$</license-p>
-</license>
-</permissions>
-$endif$
-$endif$
-$if(abstract)$
-<abstract>
-$abstract$
-</abstract>
-$endif$
-$if(tags)$
-<kwd-group kwd-group-type="author">
-$for(tags)$
-<kwd>$tags$</kwd>
-$endfor$
-</kwd-group>
-$endif$
-$if(article.funding-statement)$
-<funding-group>
-<funding-statement>$article.funding-statement$</funding-statement>
-</funding-group>
-$endif$
-</article-meta>
-$if(notes)$
-<notes>$notes$</notes>
-$endif$
-</front>
-<body>
-$body$
-</body>
-<back>
-$if(back)$
-$back$
-$endif$
-</back>
-</article>
diff --git a/data/templates/default.jats_archiving b/data/templates/default.jats_archiving
new file mode 100644
index 000000000..9b99aab12
--- /dev/null
+++ b/data/templates/default.jats_archiving
@@ -0,0 +1,7 @@
+<?xml version="1.0" encoding="utf-8" ?>
+$if(xml-stylesheet)$
+<?xml-stylesheet type="text/xsl" href="$xml-stylesheet$"?>
+$endif$
+<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD v1.2 20190208//EN"
+                  "JATS-archivearticle1.dtd">
+${ article.jats_publishing() }
diff --git a/data/templates/default.jats_articleauthoring b/data/templates/default.jats_articleauthoring
new file mode 100644
index 000000000..f86bb2d3b
--- /dev/null
+++ b/data/templates/default.jats_articleauthoring
@@ -0,0 +1,90 @@
+<?xml version="1.0" encoding="utf-8" ?>
+$if(xml-stylesheet)$
+<?xml-stylesheet type="text/xsl" href="$xml-stylesheet$"?>
+$endif$
+<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Article Authoring DTD v1.2 20190208//EN"
+                  "JATS-articleauthoring1.dtd">
+$if(article.type)$
+<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="1.2" article-type="$article.type$">
+$else$
+<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" dtd-version="1.2" article-type="other">
+$endif$
+<front>
+<article-meta>
+$if(title)$
+<title-group>
+<article-title>$title$</article-title>
+</title-group>
+$endif$
+$if(author)$
+<contrib-group>
+$for(author)$
+<contrib contrib-type="author">
+$if(author.orcid)$
+<contrib-id contrib-id-type="orcid">$author.orcid$</contrib-id>
+$endif$
+$if(author.surname)$
+<name>
+<surname>$author.surname$</surname>
+<given-names>$author.given-names$</given-names>
+</name>
+$else$
+<string-name>$author$</string-name>
+$endif$
+$if(author.email)$
+<email>$author.email$</email>
+$endif$
+$if(author.aff-id)$
+<xref ref-type="aff" rid="aff-$contrib.aff-id$"/>
+$endif$
+$if(author.cor-id)$
+<xref ref-type="corresp" rid="cor-$author.cor-id$"><sup>*</sup></xref>
+$endif$
+</contrib>
+$endfor$
+</contrib-group>
+$endif$
+$if(copyright)$
+<permissions>
+$if(copyright.statement)$
+<copyright-statement>$copyright.statement$</copyright-statement>
+$endif$
+$if(copyright.year)$
+<copyright-year>$copyright.year$</copyright-year>
+$endif$
+$if(copyright.holder)$
+<copyright-holder>$copyright.holder$</copyright-holder>
+$endif$
+$if(copyright.text)$
+<license license-type="$copyright.type$" xlink:href="$copyright.link$">
+<license-p>$copyright.text$</license-p>
+</license>
+$endif$
+</permissions>
+$endif$
+<abstract>
+$abstract$
+</abstract>
+$if(tags)$
+<kwd-group kwd-group-type="author">
+$for(tags)$
+<kwd>$tags$</kwd>
+$endfor$
+</kwd-group>
+$endif$
+$if(article.funding-statement)$
+<funding-group>
+<funding-statement>$article.funding-statement$</funding-statement>
+</funding-group>
+$endif$
+</article-meta>
+</front>
+<body>
+$body$
+</body>
+<back>
+$if(back)$
+$back$
+$endif$
+</back>
+</article>
diff --git a/data/templates/default.jats_publishing b/data/templates/default.jats_publishing
new file mode 100644
index 000000000..79e9b00d8
--- /dev/null
+++ b/data/templates/default.jats_publishing
@@ -0,0 +1,7 @@
+<?xml version="1.0" encoding="utf-8" ?>
+$if(xml-stylesheet)$
+<?xml-stylesheet type="text/xsl" href="$xml-stylesheet$"?>
+$endif$
+<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.2 20190208//EN"
+                  "JATS-publishing1.dtd">
+${ article.jats_publishing() }
-- 
cgit v1.2.3